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What is RAVEN

Applications of Synthetic Biology in Health, Energy, and Environment
RAVEN (Reconstruction, Analysis, and Visualization of Metabolic Networks) is a MATLAB toolbox that is commonly used for genome-scale metabolic model reconstruction, curation, and simulation.
Published in Chapter:
Modeling the Microbial Cells for Biotechnological Applications
Fatma Ece Altinisik Kaya (Marmara University, Turkey & Eberhard Karl University of Tübingen, Germany) and Fatma Gizem Avci (Üsküdar University, Turkey)
DOI: 10.4018/978-1-6684-6577-6.ch006
Abstract
Synthetic biology is an engineering approach that designs biological systems to have new functions for useful purposes. Rational cell design is crucial for synthetic biology and can be considered a strategy that includes increasing the production efficiency of a cell or developing a new product by changing or adding specific biochemical reactions and regulations using modern metabolic engineering techniques. Metabolic flux and control analyses with models created in silico following cellular genome mapping have also contributed significantly to rational cell design. Models make the prediction of behaviors possible without performing a vast number of experiments when biological systems are modified. The modeling of microbial cells for the biosynthesis of high-value products is gaining increasing attention in biotechnology. In this chapter, the main focus will be on the concept of the genome scale metabolic modeling of microbial cells in biotechnological applications with an emphasis on biofuels and pharmaceuticals.
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